Article Figures & Data
Figures
- FIG 1
Phylogenetic trees and plasmid content. (A) Maximum likelihood tree generated from core SNVs using kSNP (11) for K. pneumoniae strains sequenced as part of this project and reference strains. The presence of plasmids is indicated by colored or open circles. Colored circles indicate substantially identical plasmids as inferred from draft genome sequences. Open circles indicate genomes that contain the same repA type but whose plasmid content and organization were not similar. Plasmids carrying the blaKPC gene are noted with a star under the plasmid name. (B) Core SNV tree constructed as in panel A but using only ST258 strains as input. Numbers at nodes represent bootstrap support (>50%).
- FIG 2
Comparison of IncFIIk plasmid content and organization of K. pneumoniae ST258 strains. IncFIIk plasmid sequences from PacBio Hierarchical Genome Assembly Pipeline (HGAP) assemblies and reference plasmids pBK32179, pNJST258-N1, and pKpQIL were aligned using Mauve (31). Colors indicate shared locally colinear blocks. Blue, replication genes (nomenclature as described in reference 26); yellow, Tn4401; red, antibiotic resistance genes.
Additional Files
Supplemental material
Files in this Data Supplement:
- Supplemental file 1 -
Additional experimental details.
PDF, 146K
- Supplemental file 2
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Should be replaced with Supplemental file 2 revised (see below).
- Supplemental file 2 revised
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Supplemental Table S1: strain metadata and accession information. The original supplemental table file was misformatted, resulting in an incorrect shifting of the presented data.
XLSX, 23K
- Supplemental file 1 -
