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Susceptibility

In Vitro Activity of APX001A (Manogepix) and Comparator Agents against 1,706 Fungal Isolates Collected during an International Surveillance Program in 2017

M. A. Pfaller, M. D. Huband, R. K. Flamm, P. A. Bien, M. Castanheira
M. A. Pfaller
aJMI Laboratories, North Liberty, Iowa, USA
bUniversity of Iowa, Iowa City, Iowa, USA
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M. D. Huband
aJMI Laboratories, North Liberty, Iowa, USA
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R. K. Flamm
aJMI Laboratories, North Liberty, Iowa, USA
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P. A. Bien
cAmplyx Pharmaceuticals, San Diego, California, USA
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M. Castanheira
aJMI Laboratories, North Liberty, Iowa, USA
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DOI: 10.1128/AAC.00840-19
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ABSTRACT

Current antifungal agents cover a majority of opportunistic fungal pathogens; however, breakthrough invasive fungal infections continue to occur and increasingly involve relatively uncommon yeasts and molds, which often exhibit decreased susceptibility. APX001A (manogepix) is a first-in-class small-molecule inhibitor of the conserved fungal Gwt1 protein. This enzyme is required for acylation of inositol during glycosylphosphatidylinositol anchor biosynthesis. APX001A is active against the major fungal pathogens, i.e., Candida (except Candida krusei), Aspergillus, and hard-to-treat molds, including Fusarium and Scedosporium. In this study, we tested APX001A and comparators against 1,706 contemporary clinical fungal isolates collected in 2017 from 68 medical centers in North America (37.3%), Europe (43.4%), the Asia-Pacific region (12.7%), or Latin America (6.6%). Among the isolates tested, 78.5% were Candida spp., 3.9% were non-Candida yeasts, including 30 (1.8%) Cryptococcus neoformans var. grubii isolates, 14.7% were Aspergillus spp., and 2.9% were other molds. All isolates were tested by CLSI reference broth microdilution. APX001A (MIC50, 0.008 μg/ml; MIC90, 0.06 μg/ml) was the most active agent tested against Candida sp. isolates; corresponding anidulafungin, micafungin, and fluconazole MIC90 values were 16- to 64-fold higher. Similarly, APX001A (MIC50, 0.25 μg/ml; MIC90, 0.5 μg/ml) was ≥8-fold more active than anidulafungin, micafungin, and fluconazole against C. neoformans var. grubii. Against Aspergillus spp., AXP001A (50% minimal effective concentration [MEC50], 0.015 μg/ml; MEC90, 0.03 μg/ml) was comparable in activity to anidulafungin and micafungin. Aspergillus isolates (>98%) exhibited a wild-type phenotype for the mold-active triazoles (itraconazole, posaconazole, and voriconazole). APX001A was highly active against uncommon species of Candida, non-Candida yeasts, and rare molds, including 11 isolates of Scedosporium spp. (MEC values, 0.015 to 0.06 μg/ml). APX001A demonstrated potent in vitro activity against recent fungal isolates, including echinocandin- and fluconazole-resistant strains. The extended spectrum of APX001A was also notable for its potency against many less common but antifungal-resistant strains. Further studies are in progress to evaluate the clinical utility of the methyl phosphate prodrug, APX001, in difficult-to-treat resistant fungal infections.

INTRODUCTION

The systemically active antifungal agents currently include the polyenes (amphotericin B), triazoles (fluconazole, isavuconazole, itraconazole, posaconazole, and voriconazole), and echinocandins (anidulafungin, caspofungin, and micafungin) (1–3). Although these agents cover the vast majority of opportunistic fungal pathogens and are increasingly utilized in prophylactic or preemptive treatment strategies, breakthrough invasive fungal infections continue to occur and increasingly involve yeast and mold isolates that are relatively uncommon and tend to exhibit decreased susceptibility to current antifungal agents (4–6). Data from multiple sources demonstrate that mortality rates and resource utilization increase significantly when therapy is delayed or inadequate (e.g., incorrect dose or resistant isolate), further highlighting the importance of detailed epidemiological data, including the evaluation of new classes of antifungal agents (1, 7–12).

APX001 (fosmanogepix [formerly E1211]) is a first-in-class (small-molecule) antifungal agent (13–15). It is a water-soluble prodrug (intravenous and oral formulations are available) that is rapidly metabolized by systemic phosphatases to the active moiety, APX001A (manogepix [formerly E1210]). APX001A possesses a novel mechanism of action distinct from those of other classes of antifungal agents. APX001A targets the highly conserved fungal enzyme Gwt1 (15). Inhibition of Gwt1 blocks the inositol acylation step during synthesis of glycosylphosphatidylinositol-anchored proteins of the fungal cell wall. This compromises cell wall integrity, biofilm formation, and germ tube formation and results in severe fungal growth defects (14, 15). In many nonclinical studies, APX001A has shown broad-spectrum activity against common species of Candida, Cryptococcus neoformans, Cryptococcus gattii, Aspergillus spp., multidrug-resistant strains such as Candida auris, and rare hard-to-treat molds, including Fusarium spp., Scedosporium spp., and Lomentospora (Scedosporium) prolificans (13, 14, 16–22).

Concurrent with the increasing number of invasive fungal infections, antifungal surveillance programs have become important in defining the species distribution and resistance patterns of the responsible pathogens, providing needed information for appropriate empirical antifungal treatment (23–28). The SENTRY Antimicrobial Surveillance Program is a global program (https://www.jmilabs.com/sentry-surveillance-program) that has been ongoing for more than 20 years (from 1997 to 2019) and collects, in each calendar year, consecutive invasive isolates of Candida, Aspergillus, and other opportunistic fungi from medical centers located in North America, Europe, Latin America, and the Asia-Pacific region (1, 29–31). Applying modern methods for species identification (e.g., sequence-based identification and matrix-assisted laser desorption ionization–time of flight mass spectrometry [MALDI–TOF MS]), testing of antifungal susceptibility, and characterization of antifungal resistance mechanisms provides a level of standardization and clarity that makes these observations useful in the ongoing fight against resistance (1, 4, 9, 25, 29, 32–34).

In this study, we have utilized the SENTRY Antimicrobial Surveillance Program to examine the activities of APX001A, anidulafungin, micafungin, fluconazole, itraconazole, posaconazole, voriconazole, and amphotericin B against 1,706 contemporary clinical fungal isolates from bloodstream infections (BSIs), respiratory tract infections (RTIs), skin and skin structure infections (SSSIs), urinary tract infections (UTIs), intra-abdominal infections (IAIs), and other infections. The isolates were collected in 2017 from 68 medical centers in 24 countries in North America (637 isolates from 29 medical centers located in Canada or the United States), Europe (740 isolates from 26 medical centers located in Belgium, Czech Republic, France, Germany, Greece, Hungary, Ireland, Italy, Portugal, Romania, Slovenia, Spain, Sweden, or Turkey), the Asia-Pacific region (217 isolates from 9 medical centers located in Australia, Korea, New Zealand, or Thailand), or Latin America (112 isolates from 4 medical centers located in Argentina, Brazil, Chile, or Mexico).

RESULTS AND DISCUSSION

Fungal isolates tested.The frequency distributions for APX001A and the species/organism groups tested are shown in Table 1. All fungal species possessing ≥10 isolates in the surveillance program were analyzed separately. APX001A results for species with <10 isolates are listed in Tables S1 to S4 in the supplemental material.

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TABLE 1

Antimicrobial activity of APX001A against the main organisms and organism groups tested

Among the 1,706 fungal clinical isolates tested, 1,340 (78.5%) were Candida spp., 66 (3.9%) were non-Candida yeasts, including 30 (1.8%) Cryptococcus neoformans var. grubii isolates, 251 (14.7%) were Aspergillus spp., and 49 (2.9%) were other molds (Table 1; also see Tables S1 to S4). The geographic distribution was as follows: 37.3% of the isolates were from North America, 43.4% from Europe, 12.7% from the Asia-Pacific region, and 6.6% from Latin America (data not shown).

Overall activity of APX001A against Candida sp. and Cryptococcus neoformans var. grubii isolates.Among the 8 species of Candida shown in Table 1, APX001A was most active against Candida albicans (MIC90, 0.008 μg/ml) and Candida dubliniensis (MIC90, 0.008 μg/ml) and least active against Candida kefyr (MIC90, 0.5 μg/ml) and Candida krusei (MIC90, >2 μg/ml). The upper limit (UL) of the APX001A wild-type (WT) MIC distribution (WT-UL; two 2-fold dilutions higher than the modal MIC value) was 0.015 μg/ml for C. dubliniensis (100.0% WT), 0.03 μg/ml for C. albicans (100.0% WT), 0.03 μg/ml for Candida parapsilosis (98.9% WT), 0.06 μg/ml for Candida tropicalis (100.0% WT), and 0.25 μg/ml for Candida glabrata (100.0% WT) (Table 1). The WT-UL MIC values for C. kefyr and Candida lusitaniae could not be determined due to the lack of a clear mode among the isolates tested. C. krusei (MIC50, >2 μg/ml; MIC90, >2 μg/ml) is considered intrinsically resistant to APX001A (14). Overall, 91.7% of the Candida sp. isolates tested were inhibited by ≤0.06 μg/ml of APX001A and 96.6% were inhibited by ≤0.25 μg/ml of APX001A (Table 1). APX001A showed a broad MIC distribution (seven 2-fold dilution steps; range, 0.03 to 2 μg/ml), with no clear mode against 30 C. neoformans var. grubii isolates; 90.0% were inhibited at a concentration of ≤0.5 μg/ml (MIC50, 0.25 μg/ml; MIC90, 0.5 μg/ml) (Table 1).

In vitro activity of APX001A and comparators against Candida sp. and Cryptococcus neoformans var. grubii isolates.All 414 C. albicans isolates tested were inhibited by ≤0.03 μg/ml of APX001A (100.0% WT; MIC50, 0.008 μg/ml; MIC90, 0.008 μg/ml), and 99.8% of the isolates were susceptible to the echinocandins (anidulafungin and micafungin), using current CLSI breakpoint interpretive criteria (35) (Tables 1 and 2). All except 2 C. albicans isolates were susceptible to fluconazole (99.5%), all were susceptible to voriconazole (100.0%), and 93.2% had WT susceptibility (MIC, ≤0.06 μg/ml) to posaconazole (Table 2). Among 3 isolates displaying echinocandin MIC values greater than the epidemiological cutoff value (ECV) that were screened for the presence of fks hot spot (HS) mutations, all 3 displayed amino acid substitutions (fks1 HS1 R647G, fks1 HS1 S645P, and fks1 HS2 R1361H) (Table 3). The corresponding APX001A MIC values were 0.008 μg/ml for all 3 strains (Table 3).

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TABLE 2

Activity of APX001A and comparator agents tested against Candida spp. and Cryptococcus neoformans using the CLSI broth microdilution method

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TABLE 3

In vitro activity of APX001A and echinocandin comparators against Candida sp. isolates with fks alterations

Among 321 C. glabrata isolates tested, 100.0% were inhibited by APX001A (MIC50, 0.06 μg/ml; MIC90, 0.12 μg/ml) at the WT-UL MIC cutoff value of ≤0.25 μg/ml (Tables 1 and 2). Micafungin (MIC50, 0.015 μg/ml; MIC90, 0.03 μg/ml) and anidulafungin (MIC50, 0.06 μg/ml; MIC90, 0.12 μg/ml) inhibited 96.9% and 94.4% of these isolates, respectively, at the current CLSI breakpoints for these compounds (35). Among 15 C. glabrata isolates displaying echinocandin MIC values greater than the ECV that were screened for the presence of fks HS mutations, 10 harbored amino acid substitutions (Table 3). The most common substitutions were fks2 HS1 S663P (5 isolates) and fks2 HS1 Y657_Y657 del F658Y (3 isolates). Among the echinocandin-nonsusceptible isolates with fks mutations, 3 were from the United States (2.1% of North American C. glabrata isolates), 6 were from Europe (4.4% of European C. glabrata isolates), and 1 was from Mexico (Table 3). The corresponding APX001A MIC values ranged from 0.008 to 0.12 μg/ml (all below the WT-UL cutoff value) for all 10 isolates (Table 3). A total of 8.4% of the C. glabrata isolates from 2017 were categorized as resistant to fluconazole; 7.2% and 11.2% had non-wild-type (NWT) susceptibility to posaconazole and voriconazole, respectively, using the ECVs published by the CLSI (36) (Table 2).

Among 270 C. parapsilosis isolates, 98.9% were inhibited by APX001A (MIC50, 0.008 μg/ml; MIC90, 0.015 μg/ml) at the WT-UL cutoff value of ≤0.03 μg/ml (Tables 1 and 2). Micafungin (MIC50, 1 μg/ml; MIC90, 1 μg/ml) and anidulafungin (MIC50, 2 μg/ml; MIC90, 2 μg/ml) inhibited 100.0% and 93.7% of these isolates, respectively, at the current CLSI breakpoint for these compounds; 6.3% had intermediate susceptibility to anidulafungin (MIC, 4 μg/ml) (Table 2). None of the C. parapsilosis isolates displayed MIC values above the ECV for the echinocandins. Fluconazole and voriconazole were active against 90.7% and 93.3%, respectively, of the C. parapsilosis isolates using the current CLSI breakpoint criteria; 99.6% had WT susceptibility to posaconazole (Table 2).

Against 151 C. tropicalis isolates, APX001A (MIC50, 0.015 μg/ml; MIC90, 0.03 μg/ml) (Tables 1 and 2), anidulafungin (MIC50, 0.03 μg/ml; MIC90, 0.06 μg/ml), and micafungin (MIC50, 0.03 μg/ml; MIC90, 0.06 μg/ml) displayed comparable activities. All C. tropicalis isolates had WT susceptibility to APX001A (WT-UL cutoff value, 0.06 μg/ml), and both echinocandins inhibited 100.0% of the tested isolates at the current CLSI breakpoints (Table 2). Fluconazole and voriconazole inhibited 98.0% of these isolates according to current CLSI breakpoint criteria. Among 5 C. tropicalis isolates displaying echinocandin MIC values greater than the ECV, none screened positive for the presence of fks HS mutations (36).

APX001A MIC values were >2 μg/ml for all 43 C. krusei isolates tested, and all were considered susceptible to the echinocandins (Tables 1 and 2). All isolates had WT susceptibility to posaconazole, and 97.7% were susceptible to voriconazole (Table 2).

Among other Candida species, APX001A was more active against C. dubliniensis (MIC50, 0.004 μg/ml; MIC90, 0.008 μg/ml; 100.0% WT), compared to C. lusitaniae (MIC50, 0.03 μg/ml; MIC90, 0.12 μg/ml) and C. kefyr (MIC50, 0.12 μg/ml; MIC90, 0.5 μg/ml) (Tables 1 and 2). All isolates of C. dubliniensis and C. lusitaniae were classified as having WT susceptibility to anidulafungin (ECVs of 0.12 and 1 μg/ml, respectively) and micafungin (ECVs of 0.12 and 0.5 μg/ml, respectively) (Table 2). Four (10.3%) C. lusitaniae isolates and 1 (2.0%) C. dubliniensis isolate had NWT susceptibility to fluconazole (Table 2).

Among 30 C. neoformans var. grubii isolates, 90.0% were inhibited by APX001A (MIC50, 0.25 μg/ml; MIC90, 0.5 μg/ml) at a concentration of ≤0.5 μg/ml (Tables 1 and 2). All C. neoformans var. grubii isolates displayed WT MIC values for fluconazole, voriconazole, and posaconazole (Table 2). Given that echinocandins are commonly employed for empirical therapy, it is important to note that echinocandin activity was limited (MIC50, >4 μg/ml; MIC90, >4 μg/ml) against this species (Table 2).

Overall activity of APX001A against Aspergillus sp. isolates.The most common Aspergillus species (with ≥10 isolates overall) in the 2017 survey against which APX001A was tested included the following 4 Aspergillus species complexes, in order of frequency: Aspergillus fumigatus, Aspergillus niger, Aspergillus flavus, and Aspergillus terreus. The cumulative frequencies of minimal effective concentration (MEC) distributions for APX001A for these Aspergillus species are presented in Table 1.

APX001A exhibited comparable activities (MEC90, 0.015 to 0.03 μg/ml) against all 4 species shown in Table 1. The UL of the APX001A WT MEC distribution (WT-UL; two 2-fold dilutions higher than the modal MEC value) was 0.03 μg/ml for A. niger (100.0% WT), 0.06 μg/ml for A. fumigatus and A. terreus (100.0% WT), and 0.12 μg/ml for A. flavus (100.0% WT) (Table 1). Overall, 99.6% of the Aspergillus sp. isolates tested exhibited a WT phenotype (WT-UL, ≤0.06 μg/ml) for APX001A (Table 1).

In vitro activity of APX001A and comparators against Aspergillus sp. isolates.All 182 A. fumigatus isolates were inhibited by APX001A (MEC50, 0.015 μg/ml; MEC90, 0.03 μg/ml) and the echinocandins at ≤0.06 μg/ml (Table 4). These isolates displayed WT MEC/MIC results for APX001A (100.0%), itraconazole (98.4%), and voriconazole (98.4%); 90% were inhibited by ≤0.5 μg/ml of posaconazole (MIC50, 0.25 μg/ml; MIC90, 0.5 μg/ml) (Table 4). Three isolates (1.6%) had NWT susceptibility to itraconazole and voriconazole (MIC, ≥2 μg/ml).

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TABLE 4

Activity of APX001A and comparator antifungal agents tested against Aspergillus spp. using the CLSI broth microdilution method

A. flavus isolates (n = 18) were inhibited by APX001A (MEC50, 0.015 μg/ml; MEC90, 0.03 μg/ml) at ≤0.06 μg/ml (100.0% WT) (Tables 1 and 4), and this compound displayed activity similar to that of micafungin (MEC50, 0.015 μg/ml; MEC90, 0.03 μg/ml) and anidulafungin (MEC50, 0.015 μg/ml; MEC90, 0.03 μg/ml). All isolates of A. flavus had WT susceptibility to the mold-active azoles (Table 4).

All A. niger isolates (n = 23) were inhibited by APX001A (MEC50, ≤0.008 μg/ml; MEC90, 0.015 μg/ml) at ≤0.03 μg/ml (100.0% WT) (Tables 1 and 4), and this compound displayed activity similar to that of micafungin (MEC50, 0.015 μg/ml; MEC90, 0.03 μg/ml) and anidulafungin (MEC50, ≤0.008 μg/ml; MEC90, 0.015 μg/ml). All isolates of A. niger had WT susceptibility to the mold-active azoles (Table 4).

Ten A. terreus isolates were inhibited by APX001A (MEC50, 0.015 μg/ml; MEC90, 0.03 μg/ml) at ≤0.03 μg/ml (100.0% WT) (Tables 1 and 4), and this compound displayed activity similar to that of micafungin (MEC50, ≤0.008 μg/ml; MEC90, 0.015 μg/ml) and anidulafungin (MEC50, 0.03 μg/ml; MEC90, 0.03 μg/ml). All A. terreus isolates had WT susceptibility to the mold-active azoles (Table 4).

Activity of APX001A against rare species of Candida, non-Candida yeasts, and rare molds.The APX001A MIC/MEC results obtained for isolates grouped as other Candida spp. (n = 40), other yeasts (n = 36), other Aspergillus spp. (n = 18), and other molds (n = 49) are listed in Tables S1, S2, S3, and S4, respectively. Notably, APX001A was active against many of these less common and frequently antifungal (azole and/or echinocandin)-resistant fungi, including azole-resistant species of Aspergillus such as Aspergillus lentulus (MEC, 0.015 μg/ml) and Aspergillus ustus (MEC, ≤0.008 to 0.015 μg/ml) (Table S3), Fusarium solani species complex (MEC, 0.015 to 0.03 μg/ml) (Table S4), multidrug-resistant Candida auris (MIC, 0.06 μg/ml) (Table S1), and Scedosporium spp. (MEC, 0.015 to 0.06 μg/ml) (Table S4).

Overall activity of APX001A against 1,706 fungal isolates.APX001A demonstrated potent in vitro activity against 1,706 fungal isolates, similar to that of azoles and echinocandins when read under the same test/endpoint conditions, and showed excellent coverage for most common contemporary and geographically diverse isolates of Candida spp., including echinocandin-resistant isolates, and Aspergillus spp. tested as part of this study. Although azole and echinocandin resistance among Candida species other than C. glabrata remains uncommon, it is notable that both elevated MIC values (resistance or NWT susceptibility) and fks mutations were seen for isolates of C. albicans and C. glabrata. APX001A showed good activity against both echinocandin-susceptible and echinocandin-resistant Candida isolates. The extended spectrum of APX001A was also notable for its potency against many of the less common but antifungal-resistant fungi, such as C. auris, A. lentulus, A. ustus, F. solani species complex, and Scedosporium spp.

MATERIALS AND METHODS

Organisms.A total of 1,706 nonduplicate fungal isolates were collected from 68 medical centers in 24 countries in North America (637 isolates from 29 medical centers [9 U.S. census divisions]), Europe (740 isolates from 26 medical centers), the Asia-Pacific region (217 isolates from 9 medical centers), or Latin America (112 isolates from 4 medical centers). These isolates were recovered from patients with BSIs (968 isolates), RTIs (275 isolates), SSSIs (88 isolates), UTIs (39 isolates), IAIs (16 isolates), or infections at other sites (320 isolates).

Fungal identification methods.Yeast isolates either were subcultured on CHROMagar Candida medium (Becton, Dickinson, Sparks, MD, USA) upon arrival, to differentiate C. albicans, C. tropicalis, and C. krusei, or were subjected to MALDI–TOF MS using a MALDI Biotyper (Bruker Daltonics, Billerica, MA, USA). Yeasts that were not identified by these methods were identified using sequencing-based methods involving the internal transcribed spacer (ITS) region, 28S ribosomal subunit, or intergenic spacer 1 (IGS1) (for Trichosporon spp.) (1, 34, 37, 38).

Molds were cultured and identified by MALDI–TOF MS or by DNA sequencing analysis when an acceptable identification was not achieved by MALDI–TOF MS. Sequencing was performed for 28S (all isolates) and one of the following genes: β-tubulin (for Aspergillus spp.), translation elongation factor (TEF) (for Fusarium spp.), or the ITS (for all other species of filamentous fungi) (1, 34, 37, 38).

Nucleotide sequences were analyzed using Lasergene software (DNAStar, Madison, WI, USA) and compared to available sequences using BLAST (https://blast.ncbi.nlm.nih.gov/Blast.cgi). TEF sequences were analyzed using the Fusarium multilocus sequence typing database (http://www.westerdijkinstitute.nl/fusarium).

Susceptibility testing.All isolates were tested by the broth microdilution method, as described in CLSI documents M27 (39) and M38 (40). Frozen-form panels used RPMI 1640 broth supplemented with MOPS (morpholinepropane sulfonic acid) and 0.2% glucose and were inoculated with suspensions of 0.5 × 103 to 2.5 × 103 cells/ml. APX001A MIC/MEC values were determined visually, after incubation at 35°C for 24 h (Candida spp. [MIC]) or 48 to 72 h (Aspergillus spp., 48 h [MEC]; other molds [Scedosporium spp.], 72 h [MEC]; other yeasts, 48 h [MIC]; C. neoformans, 48 h [MIC]).

MIC endpoints for yeasts were read as the lowest concentration of drug that caused a significant decrease (≥50% inhibition) in growth below control levels (for APX001A [18, 41], fluconazole, posaconazole, voriconazole, and the echinocandins) or as the concentration that prevented any discernible growth (for amphotericin B) (35, 39). MIC endpoints for molds were read as the lowest concentration of drug that prevented any discernible growth (for amphotericin B, posaconazole, voriconazole, and itraconazole) (40, 42). MEC endpoints (morphology change from flocculent growth to small matted colonies) were read for APX001A and the echinocandins (16, 19, 40, 42).

Interpretive criteria (clinical breakpoints and ECVs, where available) were those published in CLSI documents M27 (39), M38 (40), M59 (36), M60 (35), and M61 (42). Neither clinical breakpoints nor ECVs have been determined for APX001A or any fungal species. For comparison purposes, we used a WT-UL value (two 2-fold dilutions higher than the modal MIC value of each MIC distribution) as the cutoff value to define the WT (MICs at or below the WT-UL value) and NWT (MICs above the WT-UL value) populations for APX001A and each species (43–45).

Quality control (QC) was performed as recommended in CLSI documents M27 and M38 (39, 40), using C. parapsilosis ATCC 22019, Aspergillus flavus ATCC 204304, and Aspergillus fumigatus ATCC MYA-3626. All MIC/MEC values for APX001A against C. parapsilosis ATCC 22019, A. flavus ATCC 204304, and A. fumigatus ATCC MYA-3626 were within QC ranges approved at the January 2018 CLSI meeting.

Echinocandin resistance mechanisms.Candida sp. isolates showing echinocandin MIC values above ECVs were subjected to whole-genome sequencing (29). Specifically, total genomic DNA was used as the input material for library construction using the Nextera XT library construction protocol and index kit (Illumina, San Diego, CA, USA), following the manufacturer’s instructions. Sequencing was performed on a MiSeq Sequencer (Illumina). Reads were error corrected using BayesHammer. Each sample was assembled using a reference-guided assembly in DNAStar SeqMan NGen v.14.0. DNA regions encoding fks were compared to sequences available in the literature.

ACKNOWLEDGMENTS

The studies were performed by JMI Laboratories and supported by Amplyx Pharmaceuticals, including funding for services related to preparing the manuscript.

JMI Laboratories contracted to perform services in 2017 for Achaogen, Allecra Therapeutics, Allergan, Amplyx Pharmaceuticals, Antabio, API, Astellas Pharma, AstraZeneca, Athelas, Basilea Pharmaceutica, Bayer AG, Becton, Dickinson and Co., Boston Pharmaceuticals, CEM-102 Pharma, Cempra, Cidara Therapeutics, Inc., CorMedix, CSA Biotech, Cutanea Life Sciences, Inc., Entasis Therapeutics, Geom Therapeutics, Inc., GSK, Iterum Therapeutics, Medpace, Melinta Therapeutics, Inc., Merck & Co., Inc., MicuRx Pharmaceuticals, Inc., N8 Medical, Inc., Nabriva Therapeutics, Inc., NAEJA-RGM, Novartis, Paratek Pharmaceuticals, Inc., Pfizer, Polyphor, Ra Pharma, Rempex, Riptide Bioscience Inc., Roche, Scynexis, Shionogi, SinSa Labs Inc., Skyline Antiinfectives, Sonoran Biosciences, Spero Therapeutics, Symbiotica, Synlogic, Synthes Biomaterials, TenNor Therapeutics, Tetraphase, The Medicines Company, Theravance Biopharma, VenatoRx Pharmaceuticals, Inc., Wockhardt, Yukon Pharma, Zai Laboratory, and Zavante Therapeutics, Inc. There are no speakers’ bureaus or stock options to declare.

FOOTNOTES

    • Received 19 April 2019.
    • Returned for modification 8 May 2019.
    • Accepted 1 June 2019.
    • Accepted manuscript posted online 10 June 2019.
  • Supplemental material for this article may be found at https://doi.org/10.1128/AAC.00840-19.

  • Copyright © 2019 American Society for Microbiology.

All Rights Reserved.

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In Vitro Activity of APX001A (Manogepix) and Comparator Agents against 1,706 Fungal Isolates Collected during an International Surveillance Program in 2017
M. A. Pfaller, M. D. Huband, R. K. Flamm, P. A. Bien, M. Castanheira
Antimicrobial Agents and Chemotherapy Jul 2019, 63 (8) e00840-19; DOI: 10.1128/AAC.00840-19

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In Vitro Activity of APX001A (Manogepix) and Comparator Agents against 1,706 Fungal Isolates Collected during an International Surveillance Program in 2017
M. A. Pfaller, M. D. Huband, R. K. Flamm, P. A. Bien, M. Castanheira
Antimicrobial Agents and Chemotherapy Jul 2019, 63 (8) e00840-19; DOI: 10.1128/AAC.00840-19
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KEYWORDS

APX001A
Gwt1
antifungal
manogepix

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