TABLE 5.

Genes in the PhoU mutant JHU-313 that are upregulated twofold and above in DNA microarray analysis relative to wild-type strain W3110a

DescriptionGenes
Pho regulon genes phoE, -A, -U, -B, -R, -H
pstS, -B, -A, -C
phnC, -D
psiF, ugpB
Flagellar genes fliA, -C, -D, -E, -F, -G, -H, - I, -J, -K, -L, -M, -N, -O, -P, -Q, -R, -S, -T, -Z
flgA, -B, -C, -E, -F, -G, -H, -D, -I, -K, -J, -L, -M, -N
motA, -B
flhB, -C, -A, -D, -E
Chemotaxis genes cheA, -B, -W, -Y, -R
aer, trg, tar, tsr
Two-component systems and TA modules arcA, cheA, cheZ, yoeB
Regulators, repressor, and small RNA sgrS, betI, spoT, malT, stpA, glnK, yefM, ycfQ, crl, rtT, isrB, rpsU, iscR, iscU, iclR, trpR, sspA
Transporter systems proV, X, artJ, fiu, proW, kptP, livJ, hisJ, copA, aroP, yhgL, yaeC, yebM, yicE, gltI, livG, oppA, metN, I, T, trxB, secG, fhuE cusF, -B, -X
Metabolic enzymes purK, -E, -M, -D, -N, -C, -F, -L, -H, -B
carA, -B
nuoA, -B, -C, -E, -F, -G, -M
argG, -A, -D, -C
cyoA, -B
sdhA, -D, -C, -B
pyrB, -I, -D, -C, -L
sucA, -B, -C
aceB, -E
nrdF, -I, -H, -E
sodA, -B
yeaA, -F
aroL, ilvC, acnB, aceA, folE, ent, yojH, fadA
  • a Selected genes from a list of 350 genes upregulated twofold and above are grouped according to function and are listed here. See the supplemental material for complete array data.