TABLE 6

Unique proteins found by AMRFinder

ExplanationNo. of proteinsc% of proteins
Drug class not in ResFinder93181.2
Proteins below thresholdsa1119.7
Gene not found in ResFinder1018.8
Translation/frameshift errorsb40.3
  • a In 10 cases, ResFinder was unable to detect these, as the nucleotide sequence was too divergent from any sequence found in the database. In 101 instances, there was no gene in the ResFinder database with >90% DNA sequence similarity to the predicted genes.

  • b Frameshifts led to early stop codons, resulting in stop codon positions that differed by more than 40 bp between the two methods.

  • c Total no. of proteins, 1,147.