TABLE 1

List of probes detecting previously characterized replicons

ProbeaPositionLocus targetedReference
A/C2_1_JN15780459363–58947repA2
B/O/K/Z_2_GU2566416440–6281RNAI2
B/O/K/Z_4_413–561RNAI26
FIA_1_AP00191848305–48692repFIA2
FIA(HI1)_1_HI1_AF250878157744–157357repFIA27
FIB_1_AP00191837699–37018repFIB2
FIB(Kpn3)_1_Kpn3_JN23370476861–77420repFIB19
FIB(KpQIL)_1_pKpQIL_JN23370585120–85859repFIB19
FIB(Mar)_1_pNDM-Mar_JN42033629199–29637repFIB5
FIB(S)_1__FN43203114696–14054repFIB4
FIC_1_AP0019183421–3660repFIC2
FII_1_AY45801689119–88859RNAI-FII2
FII(K)_1__CP0006485614–5761RNAI-FII4
FII(S)_1_CP00085826564–26303RNAI-FII4
FII(Yp)_1_Yersinia_CP000670114633–114862RNAI-FII4
FII(Y)_1_ps_CP00104920297–20071RNAI-FII4
HI1A_1_AF25087840122–39702repHIA27
HI1A(CIT)_1_pNDM-CIT_JX182975220487–220906repHIA8
HI1B(R27)_1_R27_AF25087854421–54960repHIB8
HI2_1_BX664015209836–209510repHI22
HI2A_1_BX664015211–840repHIA28
HI1B_1_pNDM-MAR_JN420336126037–126606repHIB5
HI1B(CIT)_1_pNDM-CIT_JX182975203748–203211repHIB8
I1_1_Alpha_AP005147198–339RNAI-I12
L/M_1_AF55041554207–54947repA2
N_1_AY04627631781–32294repA2
N2_1_JF78554914890–15366repA29
P_1_alpha_L2775812765–12232Control of repA2
R_1_DQ44957819367–19617repA6
T_1_AP004237423–1172repA2
U_1_DQ40110351–615repA2
W_1_EF63350725644–25886repA2
X1_1_EU37091335767–36140repA30
X2_1_JQ2693359035–8662repA2
X3_1_JN2478526440–6067repA9
X3(pEC14)_1_pEC14_JN9358997–380repA9
X4_2_FN5435046671–7382repA9
X4_1_CP0028953–376repA9
Y_1_K023801075–1839repA2
  • a The number following the final underscore is the GenBank accession number of the sequence.