TABLE 2

List of probes detecting novel replicons in large plasmids

ProbeaPositionLocus targetedSource
A/C_1__FJ705807684–1100repAThis study
B/O/K/Z_1_CU928147119424–119574RNAIThis study
B/O/K/Z_3_GQ25988824642–24793RNAIThis study
FII(p14)_1_p14_JQ41853834250–33989repFIIThis study
FII(p96A)_1_p96A_JQ41852142799–43332repFIIThis study
FII(pCoo)_1_pCoo_CR94228527847–27586repFIIThis study
FII(pCRY)_1_pCRY_NC_005814739–1331repFIIThis study
FII(pCTU2)_1_pCTU2_FN5430958327–8903repFIIThis study
FII(pECLA)_1_pECLA_CP0019193–749repFIIThis study
FII(Phn7A8)_JN232517412–671repFIIThis study
FII(pENTA)_1_pENTA_CP00302784306–84865repFIIThis study
FII(pMET)_1_pMET1_EU383016690–1266repFIIThis study
FII(pRSB107)_1_pRSB107_AJ85108921949–21689repFIIThis study
FII(pSE11)_1_pSE11_AP00924275349–75085repFIIThis study
FII(pseudo)_1_pseudo_NC_01175976101–76490repFIIThis study
FII(pYVa12790)_1_pYVa12790_AY150843121–794repFIIThis study
FII(SARC14)_1_SARC14_JQ41854036938–37382repFIIThis study
FII(Serratia)_1_Serratia_NC_00982940691–40968repFIIThis study
FII(29)_ pCE10A_CP0030351393–1135repFIIThis study
FII(pSFO)_AF4012923516–3773repFIIThis study
FII(pKP91)_CP00096689831–90060repFIIThis study
FIB(pHCM2)_1_pHCM2_AL513384104938–105812repFIBThis study
FIB(pB171)_1_pB171_AB024946250–892repFIBThis study
FIB(pCTU1)_1_pCTU1_FN5430942655–3347repFIBThis study
FIB(pCTU3)_1_pCTU3_FN543096142054–142620repFIBThis study
FIB(pECLA)_1_pECLA_CP001919211–771repFIBThis study
FIB(pENTAS01)_1_pENTAS01_CP003027141679–142239repFIBThis study
FIB(pENTE01)_1_pENTE01_CP000654142054–142620repFIBThis study
FIB(pKPHS1)_1_pKPHS1_CP003223201–761repFIBThis study
FIB(pLF82)_1_pLF82_CU638872211–771repFIBThis study
I2_1_Delta_AP002527207–522repRThis study
L/M(pOXA-48)_1_JN62628655802–56462repAThis study
L/M(pMU407)_1_pMU407_U2734522–760repAThis study
N3_EF21913429016–29492repAThis study
P(Beta)_1_Beta_U6719415582–16163repAThis study
X1_2_CP00341724754–25101repAThis study
X1_3_CP00112336953–37325repAThis study
X1_4_JN935898844–1220repAThis study
X5_1_NC_01505434413–34786repAThis study
X6_1_AM9427601–374repAThis study
p0111_AP01096254482–53598repAThis study
ICC168_FN5435046671–7382repAThis study
pADAP_1_AF135182113796–114335repAThis study
pENTAS02_1_CP00302825220–24242repAThis study
pESA2_CP0007842497–3246repAThis study
pIP31758_1_CP000718639–1556repAThis study
pIP31758_1_CP000719150807–151715repAThis study
pIP32953_1_BX936400262–1188repAThis study
pSL483_1_CP00113723947–22953repAThis study
pXuzhou21_1_CP00192771–791repAThis study
pYE854_1_AM90595077347–78325repAThis study
pEC4115_1__NC_01135193–798repAThis study
pJARS36_1__NC_015068179–712repAThis study
pSM22_1__NC_01597217401–18023repAThis study
  • a The number following the final underscore is the GenBank accession number of the sequence.