TABLE 3

List of probes detecting small plasmids

ProbeaPositionLocus targetedbSource
Col156_NC_0097811552–1705repAThis study
Col3M_JX5140652453–2609Intergenic regionThis study
Col8282_DQ9953523349–3555repAThis study
Col(BS512)_1_NC_0106561096–1328repAThis study
ColE10_1_AY167049159–177Intergenic regionThis study
Col(IMGS31)_1_NC_011406700–897ORF2This study
Col(IRGK)_1_AY5430712041–2224ORF2This study
ColKP3_JN2058006541–6820repAThis study
Col(KPHS6)_1_NC_016841326–503repAThis study
Col(MG828)_1_NC_008486967–1228repAThis study
Col(MGD2)_NC_0037891235–1370repAThis study
Col(MP18)_1_NC_013652266–458repAThis study
Col(pVC)_JX133088799–991repAThis study
Col(pWES)_1_DQ26876410151–10328repAThis study
ColRNAI_DQ2980195738–5867RNAIThis study
Col(SD853)_1_NC_0153921363–1556repAThis study
Col(VCM04)_1_HM231165776–952repAThis study
Col(YC)_1_NC_0021445043–5195repAThis study
Col(Ye4449)_1_FJ6964052409–2602mobCThis study
Col(YF27601)_1_JF9376551–175RNAIThis study
Q1_1_HE6547262181–2630repAThis study
Q2_1_NC_0143564547–4996repAThis study
P(6)_1__JF7855501477–2282repAThis study
  • a The number following the final underscore is the GenBank accession number of the sequence.

  • b ORF, open reading frame.