TABLE 2

Different manually curated GO terms related to the unfolded protein response and their associated transcripts that are activated in response to carvacrol

GO term categoryGenes in response to:
Carvacrol (5 min)Carvacrol (30 min)
Vesicle-mediated transportENT2, YSC84, UBP15, PEP3, ECM21, OBPA, RVS167, SDS24, SEC18, SRO77, VPS15, VPS21, VPS35, VPS4, CSP37LSB5, SEM11, DDI1, GDI1, SEC18, TRX1, DID2, VPS8, EFM4
Proteolytic degradationNPL4, PR26, PRE3, PRE5, PUP1, RPN10, RPN2, RPT1 VPS4, UBP15, LAP41, DOA4, DOA1, CYM1, UBP2, CDC48, PBN1, PRE4, EAR1, SAN1, RQC1, PNG1, MNL1, UBP14, UBX5, UBP12, UBP16, PRB1, LAP4, RPN9, RPN12, HOD1, UBP2, ASI3, DDI1, PIM1, PRE1, PRE3, PRE9, PUP2, RPT2RPN9, RPN12, SEM1, CDC48, UBP2, ASI3, DDI1, JEM1, PIM1, PRE1, PRE3, PRE9, PUP2, RPT2
Protein foldingFMO1, HSP104, HSP70, HSP78, TRX1, RBP1, JEM1, CYP5CYP5, JEM1, RBP1, TRX1, HSP12, orf19.4216
Amino acid metabolismSHM2, SER33, STR2, TRP5, LYS4, LYS1, LYS2, SER1 MET15, MET10, ARO8, ARO3, ARG1, AAT1MUP1, ALP1, AGP2, AGP3, HIP1, MET3, MET6
Lipid metabolismLCB4, PLC2, TGL1, ROG1, OBPA, ORM1, YDC1 VPS4, GPI15, ALG13, SMP2, HAL22, POX1, NPR1, PBN1, GPI13, PDR16, PEX5, SCT1, HFD1, YJU3, YFT2, YEH1, GPI15, IFA38, PEX6, PLC1, PLC2, RTA2 MIT1, MCR1, ERG4, ERG2HFD1, YJU3, YFT2, YEH1, GPI15, IFA38, ERG2, ERG4, MCR1, MIT1, MLS1, PEX6, PLC1, PLC2, RTA2
Cellular transportCDR1, GAP2, GNP1, AQY1, ITR1, AGP3, HGT20, ATM1, SUL2, MEP1, HIP1, HAK1, CRP1ALP1, ATX1, CDR1 CRP1, YET3, DDI1, GDI1, MEP1, HAK1, MIM1, RTA2, SUL2, SIT1
Cell wall proteins and biogenesisALS1, ECM29, MNN4, ECM15, DDR48, PHR1, BMT4CAS5, PHR1, WSC4, RHD3, ENG1, CSH1, CSP37, ALS1, BMT4